First a disclaimer: I
am lousy at interpreting a schematic.
I looked at the schematic for the radio and here's my take: It looks to me like it does two things: First it has to filter some output harmonics produced by the final transistor (probably just a little bit). Secondly, since that capacitor is just in front of the low pass filter, it also must affect the impedance matching between the transistor output and the filter.
I'm not sure why it needs to be removed for the mosfet mod unless the impedance that is presented from the mosfet doesn't need the matching before the filter.