There are a few things that can cause vswr to change when changing coax,
all else been equal your vswr should have gone up with the shorter lower loss coax,
low vswr is not always a good thing, it keeps the radio happy but its not good if the vswr is low because the coax is VERY lossy, i doubt that even if you bought crappy quality 213,
End fed 1/2waves are only 1/2 of an antenna,
a99 does have a short coax & metal tube for return currents so they will give good vswr in isolation even without coax or a mast to provide the missing half,
but they can be sensitive to coax length,
if you pick an unlucky length that causes high common mode current vswr will move around when you move the coax or grip it and slide your hand along the coax,
when they are acting like that you have bad cmc on the braid,
you will pick up every pop click & fart that goes off near the coax from noisy electrical goods & your radiation pattern won't be anything like you want it to be,
it could also be your mast, it also has common mode currents,
did you change the mast length or isolate it or ground it,
any of those thing can effect no radial end-feds including 1/2wave A99's.